Update DataGuide_AAPF_HSI.md

DataGuide_AAPF_HSI.md

@@ -11,7 +11,19 @@ This document details the file system organization and navigation procedures for
 
 #### Raw Scanned Data
 
-Directories are named using a convention that incorporates both experiment number and treatment. Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80.
+Directories are named using a convention that incorporates both experiment number and treatment. 
+
+    - Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80.
+
+#### Interim Data Product
+
+The interim data product consists of three primary components:
+    - Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document.
+    - HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data.
+    - Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest).
+
+
+
 
     Example (does not contain all associated files):
     401_80
@@ -25,13 +37,8 @@ Directories are named using a convention that incorporates both experiment numbe
     └── HSI_R_2401856_240606084952173_SWIR-TOP-DAT_401_80_240606085006035.tiff
 
 
-#### Interim Data Product
 
-The interim data product consists of three primary components:
-    - Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document.
-    - HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data.
-    - Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest).
-
+
     - Example (does not contain all associated files):
         401
         ├── Hyperspectral_data_AAPF_experiment_401.xlsx (masterfile)