Update DataGuide_AAPF_HSI.md

PlantScience · Jun 27, 2024 · 90cc95f · 90cc95f
1 parent 0188c5e
commit 90cc95f
Showing 1 changed file with 20 additions and 20 deletions.
diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md
@@ -17,24 +17,38 @@ This document details the file system organization and navigation procedures for
 
 #### Interim Data Product
 
+The interim data product consists of three primary components:
+- Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document.
+- HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data.
+- Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest).
 
 - Parent directory
     - {Experiment_Number}
     - Example: 401
-- Subdirectories (HSI data processing quality control data)
+- HSI data processing quality control data
     - {Parent_directory}/{quality_control}
     - Example: 401/quality_control
-- Subdirectories (compressed vegetation index images)
+- Compressed vegetation index images
     - {Parent_directory}/VI_images
     - Example: 401/VI_images
 
 
+    Example (does not contain all associated files):
+        401
+        ├── Hyperspectral_data_AAPF_experiment_401.xlsx (masterfile)
+        ├── quality_control
+        │   ├── header_summary_plants.csv
+        │   ├── header_summary_ref.csv
+        │   ├── HSI_R_2401761_240514080207482_VNIR-SIDE-DAT_401_20-1_240514080219626.gif
+        │   ├── HSI_R_2401761_240514080207482_VNIR-TOP-DAT_401_20-1_24051408022152.gif
+        │   ├── HSI_R_2401761_24061408172718_VNIR-SIDE-DAT_401_20-1_240614081746352.gif
+        └── VI_images
+            ├── NDVI_default.zip
+            ├── NDWI_default.zip
+            ├── NLI_default.zip
+            └── NMDI_default.zip
 
 
-The interim data product consists of three primary components:
-- Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document.
-- HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data.
-- Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest).
 
 
 
@@ -55,20 +69,6 @@ The interim data product consists of three primary components:
 
 
 
-    - Example (does not contain all associated files):
-        401
-        ├── Hyperspectral_data_AAPF_experiment_401.xlsx (masterfile)
-        ├── quality_control
-        │   ├── header_summary_plants.csv
-        │   ├── header_summary_ref.csv
-        │   ├── HSI_R_2401761_240514080207482_VNIR-SIDE-DAT_401_20-1_240514080219626.gif
-        │   ├── HSI_R_2401761_240514080207482_VNIR-TOP-DAT_401_20-1_24051408022152.gif
-        │   ├── HSI_R_2401761_24061408172718_VNIR-SIDE-DAT_401_20-1_240614081746352.gif
-        └── VI_images
-            ├── NDVI_default.zip
-            ├── NDWI_default.zip
-            ├── NLI_default.zip
-            └── NMDI_default.zip