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Update DataGuide_AAPF_RGB.md
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oh231 authored Jun 28, 2024
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Expand Up @@ -95,22 +95,19 @@ These image files visually represent morphological measurements on the vegetatio
The spreadsheets contains various phenotypic measurements derived from the RGB images and auxiliary measurement info. Here's a breakdown of the column headers:


| Column Head | Description |
|-------------------|-------------------------------------------------------------------------------------------------|
| `frame_nr` | Frame number from 0-11 for side view data |
| `Angle` | Side view angle where the vegetation is most dispersed |
| `Width`, `Height` | Dimensions of the smallest enclosing rectangle of the vegetation segments |
| `Surface` | Area of the vegetation within the pixel-wise boundary of vegetation segments |
| `Convex hull` | Area of the convex hull measured by the smallest enclosing polygon of the vegetation segments |
| `Roundedness` | Roundness of the red polygon (❗ calculation method unclear) |



| `Center_of_mass_distance` | ❗ Unclear meaning |
| `Center_of_mass_x`, `Center_of_mass_y` | Coordinates of the center of mass point |
| `Hue, Saturation`, `Intensity` | Average values for these color properties in the image |
| `Fluorescence` | Average fluorescence intensity |
| `H###`, `S##`, `V##` | Frequency of pixels with specific hue (###: 0-359), saturation (##: 0-99), and value (##: 0-99)<br>Check the definitions of hue, saturation, and value in [this link](https://changingminds.org/explanations/perception/visual/hsl.htm) |
| `F##` | Frequency of pixels with a specific fluorescence value (##: 0-99) |
| `View`| TOP FRAME: Ignore this row<br>TOP AVG: Data from the top view<br>Side{Bottom, Small, Top, Full} FRAME 0 to 11: Data from various side view angles (0, 30, ..., 330 degrees)<br>Side{Bottom, Small, Top, Full} AVG: Average of Side view FRAME data |
| Column Head | Description |
|----------------------------------------|-------------------------------------------------------------------------------------------------|
| `frame_nr` | Frame number from 0-11 for side view data |
| `Angle` | Side view angle where the vegetation is most dispersed |
| `Width`, `Height` | Dimensions of the smallest enclosing rectangle of the vegetation segments |
| `Surface` | Area of the vegetation within the pixel-wise boundary of vegetation segments |
| `Convex hull` | Area of the convex hull measured by the smallest enclosing polygon of the vegetation segments |
| `Roundedness` | Roundness of the pixel-wise boundary of vegetation segments (❗ calculation method unclear) |
| `Center_of_mass_distance` | ❗ Unclear meaning |
| `Center_of_mass_x`, `Center_of_mass_y` | Coordinates of the center of mass point |
| `Hue, Saturation`, `Intensity` | Average values for these color properties in the image |
| `Fluorescence` | Average fluorescence within the pixel-wise boundary of vegetation segments |
| `H###`, `S##`, `V##` | Frequency of pixels with specific hue (###: 0-359), saturation (##: 0-99), and value (##: 0-99)<br>Check the definitions of hue, saturation, and value in [this link](https://changingminds.org/explanations/perception/visual/hsl.htm) |
| `F##` | Frequency of pixels with a specific fluorescence value (##: 0-99) |
| `View` | TOP FRAME: Ignore this row<br>TOP AVG: Data from the top view<br>Side{Bottom, Small, Top, Full} FRAME 0 to 11: Data from various side view angles (0, 30, ..., 330 degrees)<br>Side{Bottom, Small, Top, Full} AVG: Average of Side view FRAME data |

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