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Update DataGuide_AAPF_HSI.md
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oh231 authored Jun 28, 2024
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Expand Up @@ -78,35 +78,22 @@ This document details the file system organization and navigation procedures for

The spreadsheets contains various phenotypic measurements derived from the HSI data and auxiliary measurement info. Here's a breakdown of the column headers:

- `Filename-VNIR-SIDE`
- Filename of input VNIR-SIDE data
- `Filename-VNIR-TOP`
- Filename of input VNIR-TOP data
- `Filename-SWIR-SIDE`
- Filename of input SWIR-SIDE data
- `Filename-SWIR-TOP`
- Filename of input SWIR-TOP data
- `EXP ID`
- Internal experiment number assigned in PPEW
- `POT_BARCODE`
- Unique number assigned to plant
- `VARIETY`
- Variety assigned in PPEW
- `TREATMENT`
- Treatment applied to plant
- `SCAN_TIME`
- Scan start time
- `SCAN_DATE`
- Scan start date
- `DFP`
- Age of plant in days from planting at time of imaging
- `{vegetation index}_{statistic} (e.g., NDVI_avg)`
- Vegetation index (VI) statistics within masked vegetation areas
- [List of vegetation indices used](/resources/VI.md)
- List of statistics used
- avg: average, sd: standard deviation, max: maximum, min: minimum, p##: ##-th percentile)
- `Wavelength in nm (e.g., 402.8)`
- Average reflectance over vegetation mask area (ratio of reflected energy to incident energy)

| Column Head | Description |
|----------------------|-------------------------------------------------------|
| `Filename-VNIR-SIDE` | Filename of input VNIR-SIDE data |
| `Filename-VNIR-TOP` | Filename of input VNIR-TOP data |
| `Filename-SWIR-SIDE` | Filename of input SWIR-SIDE data |
| `Filename-SWIR-TOP` | Filename of input SWIR-TOP data |
| `EXP ID` | Internal experiment number assigned in PPEW |
| `POT_BARCODE` | Unique number assigned to plant |
| `VARIETY` | Variety assigned in PPEW |
| `TREATMENT` | Treatment applied to plant |
| `SCAN_TIME` | Scan start time |
| `SCAN_DATE` | Scan start date |
| `DFP` | Age of plant in days from planting at time of imaging |
| `{vegetation index}_{statistic}<br>(e.g., NDVI_avg)`| Vegetation index (VI) statistics within masked vegetation areas<br>[List of vegetation indices used](/resources/VI.md)<br>List of statistics used (avg: average, sd: standard deviation, max: maximum, min: minimum, p##: ##-th percentile)
| `Wavelength in nm<br>(e.g., 402.8)`| Average reflectance over vegetation mask area (ratio of reflected energy to incident energy) |



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