add interactive progress bar

jiang548 · May 4, 2022 · 08a7757 · 08a7757
1 parent 7fdea14
commit 08a7757
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Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/script/network/bts1gensub.sh b/script/network/bts1gensub.sh
@@ -1,5 +1,4 @@
 #!/bin/bash
-
 #testing runtime and memeory
 echo -e "Begin testing on the first bootstrap data with the first 10 genes\n"
 
@@ -76,6 +75,8 @@ perl -pe 's/XXX/'$CHUNK'/g' < $SIGNET_SCRIPT_ROOT/network/template.sub > sub$CHU
 echo "sbatch -W sub$CHUNK.sh &" >> qsub1.sh
 fi
 
+walltime_s=$(echo $walltime | awk -F: '{ print (3600 * $1) + (60 * $2) + $3 }')
+echo "progress_bar $walltime_s 100 40 params $NJOBS slurm" >> qsub1.sh
 echo "wait" >> qsub1.sh
 
 #tmpqueue=($(slist|grep $queue))

diff --git a/script/network/bts2gensub.sh b/script/network/bts2gensub.sh
@@ -79,6 +79,8 @@ perl -pe 's/XXX/'$CHUNK'/g' < $SIGNET_SCRIPT_ROOT/network/template.sub > sub$CHU
 echo "sbatch -W sub$CHUNK.sh &" >> qsub2.sh
 fi
 
+walltime_s=$(echo $walltime | awk -F: '{ print (3600 * $1) + (60 * $2) + $3 }')
+echo "progress_bar $walltime_s 100 40 params $NJOBS slurm" >> qsub2.sh
 echo "wait" >> qsub2.sh
 
 #tmpqueue=($(slist|grep $queue))