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Update netvis.sh
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zhangdb authored May 20, 2022
1 parent 62d35c7 commit 2701497
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions script/netvis/netvis.sh
Original file line number Diff line number Diff line change
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cd $SIGNET_RESULT_ROOT/resv

echo -e "Extracting edges...\n"
echo -e "Extracting directed regulations...\n"
Rscript $SIGNET_SCRIPT_ROOT/netvis/extract_edges.R &&

echo -e "Loading results in shiny app...\n"
echo -e "Loading results into Shiny app...\n"
Rscript $SIGNET_SCRIPT_ROOT/netvis/netshiny.R &&
#Rscript -e 'shiny::runApp(paste0(Sys.getenv("SIGNET_SCRIPT_ROOT"), "/netvis/netshiny.R"), launch.browser = TRUE)' &&

echo -e "Genes for top "$ntop" networks has been returned to the folder" &&
echo -e "You can check the summary in shiny dashboard using web browser or the visualizing result end with .html in the resv foldern"
echo -e "You can check the summary in Shiny dashboard with web browser or the visualizing results in .html files inside folder resv\n"

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