user output refine

jiang548 · May 2, 2022 · 37d5dbe · 37d5dbe
1 parent 92fc3e2
commit 37d5dbe
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/script/cis-eQTL/common.ciseQTL.r b/script/cis-eQTL/common.ciseQTL.r
@@ -19,7 +19,7 @@ for (i in 1:len){
     fit=lm(y[,idx[i,1]]~x[,idx[i,2]])
     p[i]=summary(fit)$coefficients[2,4]
   }
-  if( (i%%100)==0)  print(i)
+  if( (i%%10000)==0)  print(i)
 }
 
 p=cbind(idx,p) # Col 1 is index of gene, Col 2 is index of its cis-SNP, Col 3 is p-value

diff --git a/script/cis-eQTL/low.ciseQTL.r b/script/cis-eQTL/low.ciseQTL.r
@@ -93,7 +93,7 @@ for (i in YYstartYY:YYendYY){
         }
     }    
 
-    if((i%%100)==0) print(i)
+    if((i%%10000)==0) print(i)
 }
 
 write.table(w,"low.ciseQTL.weightYYY",row.names=F,col.names=F,quote=F,sep=" ")

diff --git a/script/cis-eQTL/rare.ciseQTL.r b/script/cis-eQTL/rare.ciseQTL.r
@@ -94,7 +94,7 @@ for (i in YYstartYY:YYendYY){
         }
     }    
 
-    if((i%%100)==0) print(i)
+    if((i%%10000)==0) print(i)
 }
 
 write.table(w,"rare.ciseQTL.weightYYY",row.names=F,col.names=F,quote=F,sep=" ")
-Original file line number
+Diff line change
@@ Expand Up / @@ -93,7 +93,7 @@ for (i in YYstartYY:YYendYY){ @@
             }
         }
-        if((i%%100)==0) print(i)
+        if((i%%10000)==0) print(i)
     }
     write.table(w,"low.ciseQTL.weightYYY",row.names=F,col.names=F,quote=F,sep=" ")
@@ Expand Down @@