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Update adj_gtex.sh
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zhangdb authored May 20, 2022
1 parent 0281434 commit 74931fc
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions script/adj/adj_gtex.sh
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ $SIGNET_SCRIPT_ROOT/adj/ld.sh &&
$SIGNET_SCRIPT_ROOT/adj/adj_pca_gtex.sh &&

echo -e "\n"
echo -e "Please check the pca plots \n"
echo -e "You may want to check the PCA plots to determine the number of PCs for population stratification \n"
##pc=3 by default
pc=3
read -p "Enter the number of PC's you want to use: " pc
echo "The number of pc used will be $pc"
read -p "Enter the number of PCs for population structures: " pc
echo "The number of PCs to be used will be $pc"
echo -e "\n"

cd $SIGNET_ROOT
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