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wenbinyugroup · Sep 10, 2021 · c298599 · c298599
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diff --git a/docs/source/methods.rst b/docs/source/methods.rst
diff --git a/docs/source/beam.rst → docs/source/ms/beam.rst b/docs/source/beam.rst → docs/source/ms/beam.rst
diff --git a/docs/source/beam_methods.rst → docs/source/ms/beam_methods.rst b/docs/source/beam_methods.rst → docs/source/ms/beam_methods.rst
diff --git a/docs/source/beam_methods_dymore.rst → docs/source/ms/beam_methods_dymore.rst b/docs/source/beam_methods_dymore.rst → docs/source/ms/beam_methods_dymore.rst
diff --git a/docs/source/beam_methods_gebt.rst → docs/source/ms/beam_methods_gebt.rst b/docs/source/beam_methods_gebt.rst → docs/source/ms/beam_methods_gebt.rst
diff --git a/docs/source/beam_methods_prepro.rst → docs/source/ms/beam_methods_prepro.rst b/docs/source/beam_methods_prepro.rst → docs/source/ms/beam_methods_prepro.rst
diff --git a/docs/source/ms/ms.rst b/docs/source/ms/ms.rst
@@ -0,0 +1,10 @@
+Structure
+=========
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   beam
+   beam_methods
+
diff --git a/docs/source/ref_manual.rst b/docs/source/ref_manual.rst
@@ -5,11 +5,6 @@ Reference
    :maxdepth: 2
    :caption: Contents:
 
-   sg_structuregene
-   sg_crosssection
-   sg_materialsection
-   sg_beamproperty
-   methods
-   beam
-   beam_methods
+   sg
+   ms
    utils
diff --git a/docs/source/sg/io.rst b/docs/source/sg/io.rst
@@ -0,0 +1,34 @@
+Methods
+=======
+
+
+Input/Output
+------------
+
+.. currentmodule:: msgpi.sg.io
+
+.. highlight:: python
+
+::
+
+    import msgpi.sg.io
+
+
+Reading
+^^^^^^^
+
+.. autosummary::
+    :toctree: /_autogen/io/
+    :recursive:
+
+    iovabs.readVABSIn
+    iovabs.readVABSOut
+    iovabs.readVABSOutHomo
+    iovabs.readVABSOutStrengthRatio
+    iosc.readSCIn
+    iosc.readSCOut
+    iosc.readSCOutBeamProperty
+    iosc.readSCOutHomo
+    iosc.readSCOutFailure
+
+
diff --git a/docs/source/sg/run.rst b/docs/source/sg/run.rst
@@ -0,0 +1,54 @@
+Methods
+=======
+
+
+Preprocessing
+-------------
+
+.. currentmodule:: msgpi.sg.presg
+
+.. highlight:: python
+
+::
+
+    import msgpi.sg.presg
+
+
+.. autosummary::
+    :toctree: /_autogen/presg/
+    :recursive:
+
+    readMaterialFromXMLElement
+    preSG1D
+    preSG
+
+
+
+
+
+
+
+
+
+Analysis
+--------
+
+.. currentmodule:: msgpi.analysis
+
+.. highlight:: python
+
+::
+
+    import msgpi.analysis
+
+
+.. autosummary::
+    :toctree: _autogen/analysis/
+    :recursive:
+
+    solve
+    run
+    runVABS
+    runSwiftComp
+
+
diff --git a/docs/source/sg/sg.rst b/docs/source/sg/sg.rst
@@ -0,0 +1,14 @@
+Structure Gene
+==============
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   sg_structuregene
+   sg_crosssection
+   sg_materialsection
+   sg_beamproperty
+   io
+   run
+
diff --git a/docs/source/sg_beamproperty.rst → docs/source/sg/sg_beamproperty.rst b/docs/source/sg_beamproperty.rst → docs/source/sg/sg_beamproperty.rst
@@ -1,20 +1,20 @@
 BeamProperty
 ============
 
-.. currentmodule:: msgpi.sg
+.. currentmodule:: msgpi.sg.sg
 
 .. highlight:: python
 
 ::
 
-    msgpi.sg.BeamProperty
+    msgpi.sg.sg.BeamProperty
 
 
 Constructor
 -----------
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     BeamProperty
@@ -31,7 +31,7 @@ Attributes
 ----------
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     BeamProperty.xg2
@@ -43,7 +43,7 @@ Inertial properties
 ~~~~~~~~~~~~~~~~~~~
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     BeamProperty.mass
@@ -61,7 +61,7 @@ Structural properties
 ~~~~~~~~~~~~~~~~~~~~~
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     BeamProperty.stff
@@ -93,7 +93,7 @@ Methods
 -------
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     BeamProperty.print

diff --git a/docs/source/sg_crosssection.rst → docs/source/sg/sg_crosssection.rst b/docs/source/sg_crosssection.rst → docs/source/sg/sg_crosssection.rst
@@ -1,20 +1,20 @@
 CrossSection
 ============
 
-.. currentmodule:: msgpi.cross_section
+.. currentmodule:: msgpi.sg.cross_section
 
 .. highlight:: python
 
 ::
 
-    msgpi.cross_section.CrossSection
+    msgpi.sg.cross_section.CrossSection
 
 
 Constructor
 -----------
 
 .. autosummary::
-    :toctree: _autogen/sg/cs/
+    :toctree: /_autogen/sg/cs/
     :recursive:
 
     CrossSection
@@ -26,7 +26,7 @@ Attributes
 ----------
 
 .. autosummary::
-    :toctree: _autogen/sg/cs/
+    :toctree: /_autogen/sg/cs/
 
     CrossSection.name
     CrossSection.fn_design_tmp

diff --git a/docs/source/sg_materialsection.rst → docs/source/sg/sg_materialsection.rst b/docs/source/sg_materialsection.rst → docs/source/sg/sg_materialsection.rst
@@ -1,20 +1,20 @@
 MaterialSection
 ===============
 
-.. currentmodule:: msgpi.sg
+.. currentmodule:: msgpi.sg.sg
 
 .. highlight:: python
 
 ::
 
-    msgpi.sg.MaterialSection
+    msgpi.sg.sg.MaterialSection
 
 
 Constructor
 -----------
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     MaterialSection
@@ -31,7 +31,7 @@ Attributes
 ----------
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     MaterialSection.name
@@ -53,7 +53,7 @@ Methods
 -------
 
 .. autosummary::
-    :toctree: _autogen/sg/
+    :toctree: /_autogen/sg/
     :recursive:
 
     MaterialSection.summary