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generalized runs
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Jack Chaillet committed Apr 29, 2022
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1,261 changes: 1,261 additions & 0 deletions batchRuns/GeneralizedImmunityExp1.R

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1,120 changes: 1,120 additions & 0 deletions batchRuns/ODESGeneralizedImmunity2.R

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337 changes: 337 additions & 0 deletions batchRuns/ParamListGen-1.csv

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1,996 changes: 1,996 additions & 0 deletions batchRuns/ParamListGen-1_results.csv

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48 changes: 48 additions & 0 deletions batchRuns/ParamListGen_results.csv

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10 changes: 10 additions & 0 deletions batchRuns/errMsg/oneLoucs_14497281_1.err
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Loading required package: deSolve
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ ggplot2 3.3.5 ✔ purrr 0.3.4
✔ tibble 3.1.5 ✔ dplyr 1.0.7
✔ tidyr 1.1.4 ✔ stringr 1.4.0
✔ readr 2.1.2 ✔ forcats 0.5.1
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
/var/spool/slurm/job14497282/slurm_script: line 19: 14497282: command not found
208 changes: 208 additions & 0 deletions batchRuns/errMsg/oneLoucs_14497281_1.out
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My SLURM_ARRAY_TASK_ID: 1
[1] "ParamListGen.csv" "1" "./"
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
1e+02 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 1e+04
ND SU SD AU AD b
0e+00 0e+00 0e+00 0e+00 0e+00 1e-01
# A tibble: 6 × 3
year meanP meanN
<deSolve> <dbl> <dbl>
1 25 76472. 9374.
2 26 76509. 9379.
3 27 76548. 9384.
4 28 76590. 9389.
5 29 76634. 9394.
6 30 76656. 9397.
meanP
1 0.003713845
meanN
1 0.003703238
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 27345… 0 4466… 0 4642… 0 0 0 0 0 -1.2… 0 3369…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 25575… 0 4491… 0 7378… 0 0 0 0 0 -1.2… 0 3153…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 25515… 0 4456… 0 8339… 0 0 0 0 0 -1.2… 0 3145…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
1e+02 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 1e+04
ND SU SD AU AD b
0e+00 0e+00 0e+00 0e+00 0e+00 1e-01
# A tibble: 6 × 3
year meanP meanN
<deSolve> <dbl> <dbl>
1 25 14752. 9235.
2 26 14971. 9242.
3 27 15184. 9250.
4 28 15390. 9257.
5 29 15589. 9264.
6 30 15687. 9268.
meanP
1 0.1465579
meanN
1 0.006609948
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 1432.… 1036… 3228… 2309… 7674… 4.18… 0 0 0 -7.4… 2.62… -4.9… 596.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 1380.… 998.… 3128… 2238… 1147… 6.22… 0 0 0 -7.4… 2.62… -4.9… 574.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 1380.… 998.… 3088… 2209… 1269… 6.87… 0 0 0 -7.4… 2.62… -4.9… 574.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 1380.… 998.… 3077… 2200… 1308… 7.08… 0 0 0 -7.4… 2.62… -4.9… 574.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 1380.… 998.… 3073… 2198… 1320… 7.15… 0 0 0 -7.4… 2.62… -4.9… 574.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
1e+02 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 1e+04
ND SU SD AU AD b
0e+00 0e+00 0e+00 0e+00 0e+00 1e-01
# A tibble: 6 × 3
year meanP meanN
<deSolve> <dbl> <dbl>
1 25 7927. 9502.
2 26 8042. 9505.
3 27 8155. 9509.
4 28 8266. 9512.
5 29 8375. 9516.
6 30 8429. 9518.
meanP
1 0.1402154
meanN
1 0.002103893
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 731.9… 1550… 903.… 1900… 3338… 3.60… 0 0 0 0 -4.0… 5.07… 522.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 674.5… 1428… 935.… 1970… 5583… 5.98… 0 0 0 0 -4.0… 5.07… 481.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 671.3… 1422… 932.… 1963… 6424… 6.87… 0 0 0 0 -4.0… 5.07… 479.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 671.1… 1421… 930.… 1959… 6722… 7.19… 0 0 0 0 -4.0… 5.07… 479.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 671.1… 1421… 930.… 1958… 6827… 7.30… 0 0 0 0 -4.0… 5.07… 479.…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
0e+00 0e+00 0e+00 0e+00 0e+00 0e+00 1e+02 0e+00 0e+00 0e+00 0e+00 0e+00 1e+04
ND SU SD AU AD b
0e+00 0e+00 0e+00 0e+00 0e+00 1e-01
# A tibble: 6 × 3
year meanP meanN
<deSolve> <dbl> <dbl>
1 25 75019. 9384.
2 26 75054. 9389.
3 27 75092. 9394.
4 28 75132. 9398.
5 29 75174. 9404.
6 30 75195. 9406.
meanP
1 0.003550592
meanN
1 0.003539607
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 0 -2.5… -2.4… 0 -5.3… 1.33… 2724… 7.51… 4352… 1.40… 4418… 1.76… 3427…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 0 -2.5… -2.4… 0 -5.3… 1.33… 2544… 4.44… 4388… 4.44… 7051… 4.44… 3201…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
# A tibble: 1 × 19
PW_NU PW_ND PW_SU PW_SD PW_AU PW_AD PR_NU PR_ND PR_SU PR_SD PR_AU PR_AD NU
<deSo> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS> <deS>
1 0 -2.5… -2.4… 0 -5.3… 1.33… 2537… 4.44… 4355… 4.44… 7982… 4.44… 3193…
# … with 6 more variables: ND <deSolve>, SU <deSolve>, SD <deSolve>,
# AU <deSolve>, AD <deSolve>, b <deSolve>
PW_NU PW_ND PW_SU PW_SD PW_AU
1.380125e+03 9.983813e+02 3.073078e+03 2.198096e+03 1.325182e+04
PW_AD PR_NU PR_ND PR_SU PR_SD
7.180606e+00 2.000000e+00 0.000000e+00 0.000000e+00 -7.402572e-21
PR_AU PR_AD NU ND SU
2.622216e-18 -4.948090e-21 5.746716e+02 1.925760e+03 1.266570e+03
SD AU AD b
4.230553e+03 1.535362e+03 9.269371e+00 1.000000e-01
# A tibble: 6 × 3
year meanP meanN
<deSolve> <dbl> <dbl>
1 25 79744. 9502.
2 26 79746. 9502.
3 27 79747. 9502.
4 28 79749. 9502.
5 29 79751. 9502.
6 30 79752. 9502.
meanP
1 0.0002077632
meanN
1 8.987723e-05
PW_NU PW_ND PW_SU PW_SD PW_AU
6.711770e+02 1.421729e+03 9.301750e+02 1.957990e+03 6.864560e+03
PW_AD PR_NU PR_ND PR_SU PR_SD
7.345735e+00 2.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
PR_AU PR_AD NU ND SU
-4.034159e-19 5.077922e-21 4.795333e+02 3.278480e+03 6.604621e+02
SD AU AD b
4.510878e+03 8.124159e+02 1.001308e+01 1.000000e-01
# A tibble: 6 × 3
year meanP meanN
<deSolve> <dbl> <dbl>
1 25 81032. 9556.
2 26 81034. 9555.
3 27 81037. 9555.
4 28 81040. 9554.
5 29 81043. 9554.
6 30 81045. 9554.
meanP
1 8.932855e-05
meanN
1 0.0009581966
10 changes: 10 additions & 0 deletions batchRuns/errMsg/oneLoucs_14497281_10.err
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
Loading required package: deSolve
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ ggplot2 3.3.5 ✔ purrr 0.3.4
✔ tibble 3.1.5 ✔ dplyr 1.0.7
✔ tidyr 1.1.4 ✔ stringr 1.4.0
✔ readr 2.1.2 ✔ forcats 0.5.1
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
/var/spool/slurm/job14497291/slurm_script: line 19: 14497291: command not found
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