Update DataGuide_AAPF_RGB.md

PlantScience · Jun 27, 2024 · 835c496 · 835c496
1 parent 59c6a57
commit 835c496
Showing 1 changed file with 29 additions and 1 deletion.
diff --git a/DataGuide_AAPF_RGB.md b/DataGuide_AAPF_RGB.md
@@ -8,6 +8,33 @@ This document details the file system organization and navigation procedures for
 
 ### File System Structure
 
+    Example (does not contain all associated files):
+    Experiment_394
+    ├── 394_SandSoybeanHigh
+    │   ├── VIS_P_2401323_240226103000057_Parameter_394_SandSoybeanHigh_240226105925431.csv (For internal reference only)
+    │   ├── VIS_R_2401323_240226103000057_all-all-all-APF_394_SandSoybeanHigh_240226105925431.apf (For internal reference only)
+    │   ├── VIS_S_2401323_240226103000057_Setting_394_SandSoybeanHigh_240226105925431.csv 
+    │   ├── VIS_R_2401323_240226103000057_FLUO-SideSmall-0-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_R_2401323_240226103000057_FLUO-SideSmall-30-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_R_2401323_240226103000057_FLUO-SideSmall-60-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_R_2401323_240226103000057_RGB-SideSmall-0-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_R_2401323_240226103000057_RGB-SideSmall-30-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_R_2401323_240226103000057_RGB-SideSmall-60-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_R_2401323_240226103000057_FLUO-Top-0-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_R_2401323_240226103000057_RGB-Top-0-PNG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_V_2401323_240226103000057_RGB-SideSmall-0-MES_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_V_2401323_240226103000057_RGB-SideSmall-30-MES_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_V_2401323_240226103000057_RGB-SideSmall-60-MES_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_V_2401323_240226103000057_RGB-SideSmall-0-SEG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_V_2401323_240226103000057_RGB-SideSmall-30-SEG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_V_2401323_240226103000057_RGB-SideSmall-60-SEG_394_SandSoybeanHigh_240226105925431.png
+    │   ├── VIS_V_2401323_240226103000057_RGB-Top-0-MES_394_SandSoybeanHigh_240226105925431.png
+    │   └── VIS_V_2401323_240226103000057_RGB-Top-0-SEG_394_SandSoybeanHigh_240226105925431.png
+    ├── 394_SandSoybeanMedium
+    │   └── (The contents of the directory adhere to the file type and format conventions outlined earlier) 
+    └── 394_SandSoybeanNo
+        └── (The contents of the directory adhere to the file type and format conventions outlined earlier) 
+
 The data includes RGB and fluorescence images of plants along with derived morphological measurements and phenotypic information. Here's an example breakdown:
 
 - Parent directory
@@ -31,7 +58,8 @@ Example: VIS_V_2401323_240226103000057_RGB-SideSmall-30-MES_394_SandSoybeanHigh_
 - `<Data_Type>`
     - R: Original image
     - V: Image with vegetation segments only
-    - P: Phenotype data (spreadsheet)
+    - P: Sensor parameter (can be disregarded for data users)
+    - S: results derived from vegetation segments
 - `<POT_BARCODE>`
     - Unique identifier for the plant pot
 - `<Time_In>`