Update DataGuide_AAPF_HSI.md

PlantScience · Jun 27, 2024 · bd3f1cc · bd3f1cc
1 parent 0d24d2a
commit bd3f1cc
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/DataGuide_AAPF_HSI.md b/DataGuide_AAPF_HSI.md
@@ -2,9 +2,9 @@
 
 This document details the file system organization and navigation procedures for accessing both unprocessed hyperspectral imaging (HSI) data and the derived phenotypic measurements of the plants captured by the [Ag Alumni Seed Phenotyping Facility (AAPF)](https://ag.purdue.edu/aapf/).
 
-- Raw Scanned Data: This folder structure houses individual scans (.hdr, .md5, .raw, .tiff) for each measurement.
-- Interim Data Product: This data contains data used for quality control procedures and images representing various vegetation indices.
-- Masterfile (.xlsx): This file contains a compilation of spreadsheets and a guide document explaining the data contents.
+- `Raw Scanned Data`: This folder structure houses individual scans (.hdr, .md5, .raw, .tiff) for each measurement.
+- `Interim Data Product`: This data contains data used for quality control procedures and images representing various vegetation indices.
+- `Masterfile (.xlsx)`: This file contains a compilation of spreadsheets and a guide document explaining the data contents.
 
 
 ### File system structure
@@ -13,14 +13,14 @@ This document details the file system organization and navigation procedures for
 
 Directories are named using a convention that incorporates both experiment number and treatment. 
 
-    - Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80.
+- Example: 407_WL, 407_WW, 401_20-1, 401_20-2, 401_80.
 
 #### Interim Data Product
 
 The interim data product consists of three primary components:
-    - Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document.
-    - HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data.
-    - Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest).
+- Masterfile (`Hyperspectral_data_AAPF_experiment_{Experiment_No}.xlsx`): This file stores the derived phenotypic measurements of the plants and a guide document.
+- HSI Data Processing Quality Control Data (`quality_control`): This directory contains information for quality assessment of the HSI data processing pipeline. It includes summaries of header information for plants, white and dark reference, a detailed record of the processing procedures employed, and animated gif files used to check coregistration quality between visible and near infrared (VNIR) and shortwave infrared (SWIR) data.
+- Compressed Vegetation Index Images (`{Vegetation_Index_Type}_{ROI filter}.zip`: This section houses compressed image files for various types of vegetation indices calculated from the HSI data (ROI: region of interest).