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Christian timetagger refactoring #6

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merged 16 commits into from
Jun 4, 2025
+3,462 −1,107
Merged

Christian timetagger refactoring #6

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b6f413a
Basically rewrote everything
lange50 Apr 26, 2025
3dd9816
Update gui
lange50 Apr 26, 2025
7cbc482
Refactor terascan_logic and terascan_gui
lange50 Apr 28, 2025
b951384
fix import bug
lange50 Apr 28, 2025
95577b7
Add working terascan rough draft
lange50 Apr 28, 2025
e7676ac
Add first draft of gui. Scans run but not all buttons work.
lange50 Apr 28, 2025
4e0a184
Added TerascanLogicData to make adding data more efficient
lange50 Apr 28, 2025
e077744
Update terascan_gui.py
lange50 Apr 28, 2025
d84945e
add working terascan_logic
lange50 Apr 28, 2025
33eb531
Add new terscan_gui
lange50 Apr 28, 2025
bc216ce
Fix the units of the gui wavelength boxes
lange50 Apr 28, 2025
80d5c68
Fix gui default start and stop wavelengths
lange50 Apr 28, 2025
747b624
Update TerascanLogic.save_dage()
lange50 Apr 29, 2025
c2dd374
Fix photon counts window
lange50 Apr 30, 2025
0098f78
Consolidate TeraScanType and TeraScanRate into SolstisLaser
lange50 Apr 30, 2025
a03f29a
Add spectral wandering.ipynb
lange50 Jun 4, 2025
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109 changes: 109 additions & 0 deletions notebooks/spectral_wandering.ipynb
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Original file line number Diff line number Diff line change
@@ -0,0 +1,109 @@
{
"cells": [
{
"cell_type": "code",
"execution_count": null,
"id": "9d68bde7",
"metadata": {},
"outputs": [],
"source": [
"from time import time\n",
"import os\n",
"\n",
"\"\"\"\n",
"This script runs a series of scans using the terascan_logic module.\n",
"Set the start and stop wavelengths in the gui, as well as the number of scans.\n",
"\"\"\"\n",
"\n",
"tl = terascan_logic"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "7f66367e",
"metadata": {},
"outputs": [
{
"ename": "KeyboardInterrupt",
"evalue": "",
"output_type": "error",
"traceback": [
"\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[1;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)",
"Cell \u001b[1;32mIn[24], line 12\u001b[0m\n\u001b[0;32m 9\u001b[0m started_scans \u001b[38;5;241m=\u001b[39m \u001b[38;5;241m0\u001b[39m\n\u001b[0;32m 11\u001b[0m \u001b[38;5;28;01mwhile\u001b[39;00m \u001b[38;5;28;01mTrue\u001b[39;00m:\n\u001b[1;32m---> 12\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[43mtl\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmodule_state\u001b[49m() \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m'\u001b[39m\u001b[38;5;124midle\u001b[39m\u001b[38;5;124m'\u001b[39m: \u001b[38;5;66;03m# i.e. the scan is not running yet\u001b[39;00m\n\u001b[0;32m 13\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m started_scans \u001b[38;5;241m>\u001b[39m \u001b[38;5;241m0\u001b[39m:\n\u001b[0;32m 14\u001b[0m time_list\u001b[38;5;241m.\u001b[39mappend(time() \u001b[38;5;241m-\u001b[39m start_time)\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\netref.py:148\u001b[0m, in \u001b[0;36mBaseNetref.__getattribute__\u001b[1;34m(self, name)\u001b[0m\n\u001b[0;32m 146\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28mobject\u001b[39m\u001b[38;5;241m.\u001b[39m\u001b[38;5;21m__getattribute__\u001b[39m(\u001b[38;5;28mself\u001b[39m, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m__array__\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m 147\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m--> 148\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43msyncreq\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mconsts\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mHANDLE_GETATTR\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mname\u001b[49m\u001b[43m)\u001b[49m\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\netref.py:63\u001b[0m, in \u001b[0;36msyncreq\u001b[1;34m(proxy, handler, *args)\u001b[0m\n\u001b[0;32m 51\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Performs a synchronous request on the given proxy object.\u001b[39;00m\n\u001b[0;32m 52\u001b[0m \u001b[38;5;124;03mNot intended to be invoked directly.\u001b[39;00m\n\u001b[0;32m 53\u001b[0m \n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 60\u001b[0m \u001b[38;5;124;03m:returns: the result of the operation\u001b[39;00m\n\u001b[0;32m 61\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[0;32m 62\u001b[0m conn \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mobject\u001b[39m\u001b[38;5;241m.\u001b[39m\u001b[38;5;21m__getattribute__\u001b[39m(proxy, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124m____conn__\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[1;32m---> 63\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mconn\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43msync_request\u001b[49m\u001b[43m(\u001b[49m\u001b[43mhandler\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mproxy\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43margs\u001b[49m\u001b[43m)\u001b[49m\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\protocol.py:718\u001b[0m, in \u001b[0;36mConnection.sync_request\u001b[1;34m(self, handler, *args)\u001b[0m\n\u001b[0;32m 715\u001b[0m _async_res \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39masync_request(handler, \u001b[38;5;241m*\u001b[39margs, timeout\u001b[38;5;241m=\u001b[39mtimeout)\n\u001b[0;32m 716\u001b[0m \u001b[38;5;66;03m# _async_res is an instance of AsyncResult, the value property invokes Connection.serve via AsyncResult.wait\u001b[39;00m\n\u001b[0;32m 717\u001b[0m \u001b[38;5;66;03m# So, the _recvlock can be acquired multiple times by the owning thread and warrants the use of RLock\u001b[39;00m\n\u001b[1;32m--> 718\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_async_res\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mvalue\u001b[49m\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\async_.py:106\u001b[0m, in \u001b[0;36mAsyncResult.value\u001b[1;34m(self)\u001b[0m\n\u001b[0;32m 98\u001b[0m \u001b[38;5;129m@property\u001b[39m\n\u001b[0;32m 99\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21mvalue\u001b[39m(\u001b[38;5;28mself\u001b[39m):\n\u001b[0;32m 100\u001b[0m \u001b[38;5;250m \u001b[39m\u001b[38;5;124;03m\"\"\"Returns the result of the operation. If the result has not yet\u001b[39;00m\n\u001b[0;32m 101\u001b[0m \u001b[38;5;124;03m arrived, accessing this property will wait for it. If the result does\u001b[39;00m\n\u001b[0;32m 102\u001b[0m \u001b[38;5;124;03m not arrive before the expiry time elapses, :class:`AsyncResultTimeout`\u001b[39;00m\n\u001b[0;32m 103\u001b[0m \u001b[38;5;124;03m is raised. If the returned result is an exception, it will be raised\u001b[39;00m\n\u001b[0;32m 104\u001b[0m \u001b[38;5;124;03m here. Otherwise, the result is returned directly.\u001b[39;00m\n\u001b[0;32m 105\u001b[0m \u001b[38;5;124;03m \"\"\"\u001b[39;00m\n\u001b[1;32m--> 106\u001b[0m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mwait\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 107\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_is_exc:\n\u001b[0;32m 108\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_obj\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\async_.py:51\u001b[0m, in \u001b[0;36mAsyncResult.wait\u001b[1;34m(self)\u001b[0m\n\u001b[0;32m 44\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"Waits for the result to arrive. If the AsyncResult object has an\u001b[39;00m\n\u001b[0;32m 45\u001b[0m \u001b[38;5;124;03mexpiry set, and the result did not arrive within that timeout,\u001b[39;00m\n\u001b[0;32m 46\u001b[0m \u001b[38;5;124;03man :class:`AsyncResultTimeout` exception is raised\"\"\"\u001b[39;00m\n\u001b[0;32m 47\u001b[0m \u001b[38;5;28;01mwhile\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m (\u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_is_ready \u001b[38;5;129;01mor\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mexpired):\n\u001b[0;32m 48\u001b[0m \u001b[38;5;66;03m# Serve the connection since we are not ready. Suppose\u001b[39;00m\n\u001b[0;32m 49\u001b[0m \u001b[38;5;66;03m# the reply for our seq is served. The callback is this class\u001b[39;00m\n\u001b[0;32m 50\u001b[0m \u001b[38;5;66;03m# so __call__ sets our obj and _is_ready to true.\u001b[39;00m\n\u001b[1;32m---> 51\u001b[0m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_conn\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mserve\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_ttl\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 53\u001b[0m \u001b[38;5;66;03m# Check if we timed out before result was ready\u001b[39;00m\n\u001b[0;32m 54\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_is_ready:\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\protocol.py:438\u001b[0m, in \u001b[0;36mConnection.serve\u001b[1;34m(self, timeout, wait_for_lock)\u001b[0m\n\u001b[0;32m 436\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[0;32m 437\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m \u001b[38;5;66;03m# Ensure data is initialized\u001b[39;00m\n\u001b[1;32m--> 438\u001b[0m data \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_channel\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mpoll\u001b[49m\u001b[43m(\u001b[49m\u001b[43mtimeout\u001b[49m\u001b[43m)\u001b[49m \u001b[38;5;129;01mand\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_channel\u001b[38;5;241m.\u001b[39mrecv()\n\u001b[0;32m 439\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m exc:\n\u001b[0;32m 440\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_recvlock\u001b[38;5;241m.\u001b[39mrelease()\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\channel.py:47\u001b[0m, in \u001b[0;36mChannel.poll\u001b[1;34m(self, timeout)\u001b[0m\n\u001b[0;32m 45\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21mpoll\u001b[39m(\u001b[38;5;28mself\u001b[39m, timeout):\n\u001b[0;32m 46\u001b[0m \u001b[38;5;250m \u001b[39m\u001b[38;5;124;03m\"\"\"polls the underlying steam for data, waiting up to *timeout* seconds\"\"\"\u001b[39;00m\n\u001b[1;32m---> 47\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mstream\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mpoll\u001b[49m\u001b[43m(\u001b[49m\u001b[43mtimeout\u001b[49m\u001b[43m)\u001b[49m\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\core\\stream.py:48\u001b[0m, in \u001b[0;36mStream.poll\u001b[1;34m(self, timeout)\u001b[0m\n\u001b[0;32m 46\u001b[0m \u001b[38;5;28;01mwhile\u001b[39;00m \u001b[38;5;28;01mTrue\u001b[39;00m:\n\u001b[0;32m 47\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[1;32m---> 48\u001b[0m rl \u001b[38;5;241m=\u001b[39m \u001b[43mp\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mpoll\u001b[49m\u001b[43m(\u001b[49m\u001b[43mtimeout\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mtimeleft\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 49\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m select_error:\n\u001b[0;32m 50\u001b[0m ex \u001b[38;5;241m=\u001b[39m sys\u001b[38;5;241m.\u001b[39mexc_info()[\u001b[38;5;241m1\u001b[39m]\n",
"File \u001b[1;32m~\\anaconda3\\envs\\qudi-env\\lib\\site-packages\\rpyc\\lib\\compat.py:164\u001b[0m, in \u001b[0;36mSelectingPoll.poll\u001b[1;34m(self, timeout)\u001b[0m\n\u001b[0;32m 162\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m [] \u001b[38;5;66;03m# need to return an empty array in this case\u001b[39;00m\n\u001b[0;32m 163\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m--> 164\u001b[0m rl, wl, _ \u001b[38;5;241m=\u001b[39m \u001b[43mselect\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mrlist\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mwlist\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mtimeout\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 165\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m [(fd, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mr\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;28;01mfor\u001b[39;00m fd \u001b[38;5;129;01min\u001b[39;00m rl] \u001b[38;5;241m+\u001b[39m [(fd, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mw\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;28;01mfor\u001b[39;00m fd \u001b[38;5;129;01min\u001b[39;00m wl]\n",
"\u001b[1;31mKeyboardInterrupt\u001b[0m: "
]
}
],
"source": [
"start_time = time()\n",
"\n",
"data_save_dir = os.path.join('D:', 'qudi_data', 'multi_scan', '00000')\n",
"\n",
"time_list = []\n",
"data_file_list = []\n",
"\n",
"n_scans = 2\n",
"started_scans = 0\n",
"tl.clear_data()\n",
"\n",
"while True:\n",
" if tl.module_state() == 'idle': # i.e. the scan is not running yet\n",
" if started_scans > 0:\n",
" time_list.append(time() - start_time)\n",
" data_file_list.append(tl.save_data(data_save_dir))\n",
" tl.clear_data()\n",
" \n",
" \n",
" if started_scans < n_scans:\n",
" tl.start_scan()\n",
" started_scans += 1\n",
" else:\n",
" print(f\"Completed {n_scans} scans.\")\n",
" break\n",
" \n",
" elif tl.module_state() == 'locked':\n",
" continue"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "73f3c420",
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "qudi",
"language": "python",
"name": "qudi"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.16"
}
},
"nbformat": 4,
"nbformat_minor": 5
}
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